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SRX21780259: GSM7780745: jmj1-1_H3_rep2; Brachypodium distachyon; ChIP-Seq
1 ILLUMINA (Illumina NovaSeq 6000) run: 37.7M spots, 11.3G bases, 3.3Gb downloads

External Id: GSM7780745_r1
Submitted by: School of Life Science, Fudan University
Study: ChIP-seq to test histone methylation in Bd21-3 and the jmj1-1 mutant.
show Abstracthide Abstract
To investigate the impact of BdJMJ1 on H3K4me1, H3K4me2, H3K4me3, and H3 at the genome-wide level. Overall design: ChIP-seq for Bd21-3 and jmj1-1 plants using H3K4me1/2/3 and H3 antibodies.
Sample: jmj1-1_H3_rep2
SAMN37395667 • SRS18884692 • All experiments • All runs
Library:
Name: GSM7780745
Instrument: Illumina NovaSeq 6000
Strategy: ChIP-Seq
Source: GENOMIC
Selection: ChIP
Layout: PAIRED
Construction protocol: Seedlings were harvested and fixed with the buffer containing 0.4 M sucrose, 10 mM Tris-HCl (pH 8.0), 1 mM EDTA, 1% formaldehyde, and 1 mM PMSF.Chromatin was sonicated into DNA fragments around 200~500-bp in size using lysis buffer containing 50 mM HEPES (pH 7.5), 150 mM NaCl, 1 mM EDTA, 1 mM PMSF, 1% SDS, 0.1% Na deoxycholate, 1% Triton X-100 and Protease Inhibitor cocktail. The ChIP-seq libraries were constructed by following the manufacturer's instructions of VAHTSTM Universal DNA Library Prep Kit (Vazyme).
Runs: 1 run, 37.7M spots, 11.3G bases, 3.3Gb
Run# of Spots# of BasesSizePublished
SRR2606421837,654,50411.3G3.3Gb2024-02-27

ID:
29495390

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